PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235249.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 174aa    MW: 19860.8 Da    PI: 6.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235249.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-065597754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +r RR ri ++++ Lr+llP +     +    + ++  ++++Ik L
  XP_008235249.1 55 VTDRSRRIRIAEKLDALRQLLPIS-----TEGGRSFVVDDVIDHIKFL 97
                    6789******************97.....2222345556666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.2394897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-853105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-554104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-558100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MHNINFTPSI ILQGQIIYNG DKKDSVSQVD PRARSALPDF HSQPHHHIST QRAAVTDRSR  60
RIRIAEKLDA LRQLLPISTE GGRSFVVDDV IDHIKFLQLQ MKDLCRSRLG GETITEPIIF  120
REGYGHYFCH QNMLNEPLEE MMGKLLETNP MAASQLLENK DLLLLPMDYS EPLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235251.11e-128PREDICTED: transcription factor UNE12-like
RefseqXP_008235250.11e-128PREDICTED: transcription factor UNE12-like
RefseqXP_008235249.11e-128PREDICTED: transcription factor UNE12-like
TrEMBLW9QKQ91e-53W9QKQ9_9R
STRINGVIT_07s0104g00250.t012e-44(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-17LJRHL1-like 1